Plotting: pl

.. module:: grassp.pl

.. currentmodule:: grassp

This module provides visualization functions for proteomics data.

Many of scanpy's plotting functions can be directly used with grassp AnnData objects. So if you are looking for a specific plot, it is worth checking if it is already implemented in scanpy.

Preprocessing

.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   pl.highly_variable_proteins
   pl.bait_volcano_plots
   pl.protein_clustermap

Integration

.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   pl.aligned_umap
   pl.remodeling_score
   pl.remodeling_sankey

Clustering

.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   pl.tagm_map_contours
   pl.tagm_map_pca_ellipses