Tools: tl

.. module:: grassp.tl

.. currentmodule:: grassp

This module provides various tools for analyzing proteomics data.

Clustering

.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   tl.leiden_mito_sweep
   tl.knn_annotation
   tl.calculate_interfacialness_score
   tl.get_n_nearest_neighbors
   tl.silhouette_score
   tl.calinski_habarasz_score
   tl.tagm_map_train
   tl.tagm_map_predict

Enrichment

.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   tl.calculate_cluster_enrichment

Integration

.. autosummary::
   :nosignatures:
   :toctree: ../generated/

   tl.align_adatas
   tl.aligned_umap
   tl.remodeling_score