grassp.pl.remodeling_sankey

remodeling_sankey(data, data2, cluster_key='leiden', ax=None, aspect=20, fontsize=12, figsize=(10, 11), show=None, save=None)

Plot a Sankey diagram showing protein transitions between clusters.

Parameters:

data AnnData

First annotated data matrix

data2 AnnData

Second annotated data matrix

cluster_key str (default: 'leiden')

Key in data.obs and data2.obs containing cluster assignments

ax Optional[Axes] (default: None)

Matplotlib axes object to plot on. If None, creates new figure

aspect int (default: 20)

Aspect ratio of the plot

fontsize int (default: 12)

Font size for labels

figsize tuple[float, float] (default: (10, 11))

Size of the figure in inches

show Optional[bool] (default: None)

Show the plot. If None, use scanpy’s plotting settings

save Union[bool, str, None] (default: None)

If True or a str, save the figure. A string is appended to the default filename. Infer the filetype if ending on {‘.pdf’, ‘.png’, ‘.svg’}

Return type:

Axes | None

Returns:

ax or None If show=False, returns matplotlib axes object. Otherwise returns None