grassp.pl.tagm_map_contours#
- tagm_map_contours(adata, embedding='umap', size=100, components=None, dimensions=None, levels=4, ax=None, **kwargs)[source]#
Plot the TAGM map of the adata object.
- Parameters:
- adata
AnnData The adata object.
- size
int(default:100) The number of samples to draw from the TAGM map.
- ax
Optional[Axes] (default:None) The axis to plot the TAGM map on.
- embedding Literal['umap', 'pca']
- components str | Sequence[str] | None
- dimensions tuple[int, int] | Sequence[tuple[int, int]] | None
- levels int
- adata