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grassp 0.1 documentation - Home grassp 0.1 documentation - Home
  • Installation
  • API
    • Preprocessing: pp
      • grassp.pp.calculate_qc_metrics
      • grassp.pp.filter_samples
      • grassp.pp.filter_proteins
      • grassp.pp.highly_variable_proteins
      • grassp.pp.filter_proteins_per_replicate
      • grassp.pp.aggregate_proteins
      • grassp.pp.aggregate_samples
      • grassp.pp.normalize_total
      • grassp.pp.drop_excess_MQ_metadata
      • grassp.pp.remove_contaminants
      • grassp.pp.impute_gaussian
    • Tools: tl
      • grassp.tl.leiden_mito_sweep
      • grassp.tl.knn_annotation
      • grassp.tl.calculate_interfacialness_score
      • grassp.tl.get_n_nearest_neighbors
      • grassp.tl.silhouette_score
      • grassp.tl.calinski_habarasz_score
      • grassp.tl.tagm_map_train
      • grassp.tl.tagm_map_predict
      • grassp.tl.calculate_cluster_enrichment
      • grassp.tl.align_adatas
      • grassp.tl.aligned_umap
      • grassp.tl.remodeling_score
    • Plotting: pl
      • grassp.pl.highly_variable_proteins
      • grassp.pl.bait_volcano_plots
      • grassp.pl.protein_clustermap
      • grassp.pl.aligned_umap
      • grassp.pl.remodeling_score
      • grassp.pl.remodeling_sankey
      • grassp.pl.tagm_map_contours
      • grassp.pl.tagm_map_pca_ellipses
    • IO
    • Datasets
  • Contributors
  • References
  • .md

API

API#

Import grassp as:

import grassp as gr
  • Preprocessing: pp
    • Basic Preprocessing
    • Imputation
  • Tools: tl
    • Clustering
    • Enrichment
    • Integration
  • Plotting: pl
    • Preprocessing
    • Integration
    • Clustering
  • IO
  • Datasets

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Preprocessing: pp

By Max Frank

© Copyright 2025, Max Frank.