grassp.tl.remodeling_score

remodeling_score(data_list, aligned_umap_key='X_aligned_umap', key_added='remodeling_score')

Get aligned UMAP embeddings from each AnnData object.

Parameters:

data_list List[AnnData]

List of AnnData objects containing aligned UMAP embeddings

aligned_umap_key str (default: 'X_aligned_umap')

Key in .obsm where aligned UMAP embeddings are stored

key_added str

Return type:

List[AnnData]

Returns:

embeddings : AnnData List of numpy arrays containing aligned UMAP embeddings