Index A | B | C | D | F | G | H | I | K | L | M | N | P | Q | R | S | T A aggregate_proteins() (in module grassp.pp) aggregate_samples() (in module grassp.pp) align_adatas() (in module grassp.tl) aligned_umap() (in module grassp.pl) (in module grassp.tl) B bait_volcano_plots() (in module grassp.pl) C calculate_cluster_enrichment() (in module grassp.tl) calculate_enrichment_vs_all() (in module grassp.pp) calculate_enrichment_vs_untagged() (in module grassp.pp) calculate_interfacialness_score() (in module grassp.tl) calculate_qc_metrics() (in module grassp.pp) calinski_habarasz_score() (in module grassp.tl) D drop_excess_MQ_metadata() (in module grassp.pp) F filter_min_consecutive_fractions() (in module grassp.pp) filter_proteins() (in module grassp.pp) filter_proteins_per_replicate() (in module grassp.pp) filter_samples() (in module grassp.pp) G get_n_nearest_neighbors() (in module grassp.tl) grassp.ds module grassp.pl module grassp.pp module grassp.tl module H hein_2024() (in module grassp.ds) hek_atps_2025() (in module grassp.ds) hek_dc_2025() (in module grassp.ds) highly_variable_proteins() (in module grassp.pl) (in module grassp.pp) I impute_gaussian() (in module grassp.pp) itzhak_2016() (in module grassp.ds) K knn_annotation() (in module grassp.tl) L leiden_mito_sweep() (in module grassp.tl) M module grassp.ds grassp.pl grassp.pp grassp.tl mr_plot() (in module grassp.pl) N normalize_total() (in module grassp.pp) P protein_clustermap() (in module grassp.pl) Q qsep_boxplot() (in module grassp.pl) qsep_heatmap() (in module grassp.pl) R remodeling_sankey() (in module grassp.pl) remodeling_score() (in module grassp.pl) (in module grassp.tl) remove_contaminants() (in module grassp.pp) S sample_heatmap() (in module grassp.pl) schessner_2023() (in module grassp.ds) silhouette_score() (in module grassp.tl) T tagm_map_contours() (in module grassp.pl) tagm_map_pca_ellipses() (in module grassp.pl) tagm_map_predict() (in module grassp.tl) tagm_map_train() (in module grassp.tl) ternary() (in module grassp.pl) to_knn_graph() (in module grassp.tl)
