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grassp 0.1 documentation - Home grassp 0.1 documentation - Home
  • Installation
  • API
    • Preprocessing: pp
      • grassp.pp.calculate_qc_metrics
      • grassp.pp.filter_samples
      • grassp.pp.filter_proteins
      • grassp.pp.highly_variable_proteins
      • grassp.pp.filter_proteins_per_replicate
      • grassp.pp.aggregate_proteins
      • grassp.pp.aggregate_samples
      • grassp.pp.normalize_total
      • grassp.pp.drop_excess_MQ_metadata
      • grassp.pp.remove_contaminants
      • grassp.pp.impute_gaussian
    • Tools: tl
      • grassp.tl.leiden_mito_sweep
      • grassp.tl.knn_annotation
      • grassp.tl.calculate_interfacialness_score
      • grassp.tl.get_n_nearest_neighbors
      • grassp.tl.silhouette_score
      • grassp.tl.calinski_habarasz_score
      • grassp.tl.tagm_map_train
      • grassp.tl.tagm_map_predict
      • grassp.tl.calculate_cluster_enrichment
      • grassp.tl.align_adatas
      • grassp.tl.aligned_umap
      • grassp.tl.remodeling_score
    • Plotting: pl
      • grassp.pl.highly_variable_proteins
      • grassp.pl.bait_volcano_plots
      • grassp.pl.protein_clustermap
      • grassp.pl.aligned_umap
      • grassp.pl.remodeling_score
      • grassp.pl.remodeling_sankey
      • grassp.pl.tagm_map_contours
      • grassp.pl.tagm_map_pca_ellipses
    • IO
    • Datasets
  • Contributors
  • References

Index

A | B | C | D | F | G | H | I | K | L | M | N | P | R | S | T

A

  • aggregate_proteins() (in module grassp.pp)
  • aggregate_samples() (in module grassp.pp)
  • align_adatas() (in module grassp.tl)
  • aligned_umap() (in module grassp.pl)
    • (in module grassp.tl)

B

  • bait_volcano_plots() (in module grassp.pl)

C

  • calculate_cluster_enrichment() (in module grassp.tl)
  • calculate_interfacialness_score() (in module grassp.tl)
  • calculate_qc_metrics() (in module grassp.pp)
  • calinski_habarasz_score() (in module grassp.tl)

D

  • drop_excess_MQ_metadata() (in module grassp.pp)

F

  • filter_proteins() (in module grassp.pp)
  • filter_proteins_per_replicate() (in module grassp.pp)
  • filter_samples() (in module grassp.pp)

G

  • get_n_nearest_neighbors() (in module grassp.tl)
  • grassp.pl
    • module
  • grassp.pp
    • module
  • grassp.tl
    • module

H

  • highly_variable_proteins() (in module grassp.pl)
    • (in module grassp.pp)

I

  • impute_gaussian() (in module grassp.pp)

K

  • knn_annotation() (in module grassp.tl)

L

  • leiden_mito_sweep() (in module grassp.tl)

M

  • module
    • grassp.pl
    • grassp.pp
    • grassp.tl

N

  • normalize_total() (in module grassp.pp)

P

  • protein_clustermap() (in module grassp.pl)

R

  • remodeling_sankey() (in module grassp.pl)
  • remodeling_score() (in module grassp.pl)
    • (in module grassp.tl)
  • remove_contaminants() (in module grassp.pp)

S

  • silhouette_score() (in module grassp.tl)

T

  • tagm_map_contours() (in module grassp.pl)
  • tagm_map_pca_ellipses() (in module grassp.pl)
  • tagm_map_predict() (in module grassp.tl)
  • tagm_map_train() (in module grassp.tl)

By Max Frank

© Copyright 2025, Max Frank.