grassp.tl.knn_f1_score

knn_f1_score(data, gt_col, pred_col=None, weights=None, average='macro')

F1 score.

Parameters:

data

AnnData object.

gt_col

Observation column with ground-truth labels.

pred_col default: None

Observation column with predicted labels.

weights default: None

Weights for the F1 score.

average default: 'macro'

Average method for the F1 score. If None the score for each label is returned.

Returns:

F1 score.