grassp.io.read_diann

read_diann(*args, **kwargs)

Read DIA-NN report.tsv file into an AnnData object.

This function serves as a wrapper around read_diann(), automatically transposing the data so that proteins are stored in .obs (rows) and samples in .var (columns), following grassp conventions.

Parameters:

*args

Positional arguments passed to protdata.io.read_diann().

**kwargs

Keyword arguments passed to protdata.io.read_diann().

Return type:

AnnData

Returns:

AnnData Annotated data object with proteins as observations (rows) and samples as variables (columns).

See also

protdata.io.read_diann

Original protdata function for reading DIA-NN files.

Examples

>>> import grassp as gr
>>> adata = gr.io.read_diann('report.tsv')