grassp.pp.neighbors

neighbors(data, layer=None, **kwargs)

Compute the nearest neighbors distance matrix using scanpy.pp.neighbors.

This function is a wrapper around scanpy.pp.neighbors() scanpy.pp.neighbors adding support for using different layers.

Parameters:

data

The annotated data matrix with proteins as observations (rows).

layer default: None

Layer to use for nearest neighbors calculation.

**kwargs

Additional arguments to pass to scanpy.pp.neighbors.

Return type:

None