Tutorials#
Below you will find hands-on notebooks demonstrating typical grassp workflows.
Basic processing tutorials#
Advanced annotation tutorials#
pRoloc interoperability#
grassp and the R/Bioconductor pRoloc framework exchange objects as h5ad in both directions, so there are two tutorials — pick the one that matches where your work lives.
for grassp users — you preprocess and plot in Python, hand the object to R for a classifier pRoloc has and grassp does not, and read it back.
for pRoloc users — you work in R, and want to pull a dataset off the grassp portal and analyse it with pRoloc. Needs no Python at all.